Publications

Publications.

Our recent published work about chromosome and chromatin dynamics.

The MVPs (masterful versatile players): Chromatin factors as pivotal mediators between 3D genome organization and the response to environmentn
– Dias Lopes et al. 2024

An atlas of the tomato epigenome reveals that KRYPTONITE shapes TAD- like boundaries through the control of H3K9ac distribution
– An et al. 2024

Genetic–epigenetic interplay in the determination of plant 3D genome organization
– He & Dias Lopes et al. 2024

Chromatin dynamics and RNA metabolism are double-edged swords for the maintenance of plant genome integrity.
– Bergis-Ser et al. 2024

The role of epigenetics in tomato stress adaptation.
– Delarue et al. 2024

Distinctive and complementary roles of E2F transcription factors during plant replication stress responses.
– Nisa et al. 2023

HSFA1a modulates plant heat stress responses and alters the 3D chromatin organization of enhancer-promoter interactions.
– Huang et al. 2023

A hierarchical transcriptional network activates specific CDK inhibitors that regulate G2 to control cell size and number in Arabidopsis.
– Nomoto et al. 2022




Histone Modification ChIP-seq on Arabidopsis thaliana Plantlets.
– Ramirez-Prado et al. 2021


Polycomb-dependent differential chromatin compartmentalization determines gene coregulation in Arabidopsis.
– Huang et al. 2021


The plant DNA polymerase theta is essential for the repair of replication-associated DNA damage.
– Nisa et al. 2021


New partners for old friends: Plant SWI/SNF complexes.
– JS. Ramirez-Prado, M. Benhamed – Molecular Plant, 2021

Immunity onset alters plant chromatin and utilizes EDA16 to regulate oxidative homeostasis.
– Pardal et al. 2021

Wheat chromatin architecture is organized in genome territories and transcription factories.
– Concia et al. 2020

The matrix revolutions: towards the decoding of the plant chromatin three-dimensional reality.
– Huang et al. 2020

A new role for histone demethylases in the maintenance of plant genome integrity.
– Antunez-Sanchez et al. 2020

GCN5 modulates salicylic acid homeostasis by regulating H3K14ac levels at the 5′ and 3′ ends of its target genes.
– Kim et al. 2020

R-Loop Mediated trans Action of the APOLO Long Noncoding RNA.
– Ariel et al. 2020

The Polycomb protein LHP1 regulates Arabidopsis thaliana stress responses through the repression of the MYC2- dependent branch of immunity.
– Ramirez-Prado et al. 2019

The Plant DNA Damage Response: Signaling Pathways Leading to Growth Inhibition and Putative Role in Response to Stress Conditions.
– Nisa et al. 2019